Author: Matti Pastell
Date: 15th April 2013
This an example of a script that can be published using
Pweave. The script can be executed
normally using Python or published to HTML with Pweave
Text is written in markdown in lines starting with "#'
" and code
is executed and results are included in the published document.
The concept is similar to
publishing documents with MATLAB or using
stitch with Knitr.
Notice that you don't need to define chunk options (see
Pweave docs
),
but you do need one line of whitespace between text and code.
If you want to define options you can do it on using a line starting with
#+
. just before code e.g. #+ term=True, caption='Fancy plots.'
.
If you're viewing the HTML version have a look at the
source to see the markup.
The code and text below comes mostly from my blog post FIR design with SciPy, but I've updated it to reflect new features in SciPy.
We'll implement lowpass, highpass and ' bandpass FIR filters. If you want to read more about DSP I highly recommend The Scientist and Engineer's Guide to Digital Signal Processing which is freely available online.
Let's first define functions to plot filter properties.
from pylab import *
import scipy.signal as signal
#Plot frequency and phase response
def mfreqz(b,a=1):
w,h = signal.freqz(b,a)
h_dB = 20 * log10 (abs(h))
subplot(211)
plot(w/max(w),h_dB)
ylim(-150, 5)
ylabel('Magnitude (db)')
xlabel(r'Normalized Frequency (x$\pi$rad/sample)')
title(r'Frequency response')
subplot(212)
h_Phase = unwrap(arctan2(imag(h),real(h)))
plot(w/max(w),h_Phase)
ylabel('Phase (radians)')
xlabel(r'Normalized Frequency (x$\pi$rad/sample)')
title(r'Phase response')
_ = subplots_adjust(hspace=1)
show()
#Plot step and impulse response
def impz(b,a=1):
l = len(b)
impulse = repeat(0.,l); impulse[0] =1.
x = arange(0,l)
response = signal.lfilter(b,a,impulse)
subplot(211)
stem(x, response)
ylabel('Amplitude')
xlabel(r'n (samples)')
title(r'Impulse response')
subplot(212)
step = cumsum(response)
stem(x, step)
ylabel('Amplitude')
xlabel(r'n (samples)')
title(r'Step response')
_ = subplots_adjust(hspace=1)
show()
Designing a lowpass FIR filter is very simple to do with SciPy, all you need to do is to define the window length, cut off frequency and the window.
The Hamming window is defined as: \(w(n) = \alpha - \beta\cos\frac{2\pi n}{N-1}\), where \(\alpha=0.54\) and \(\beta=0.46\)
The next code chunk is executed in term mode, see the Python script for syntax. Notice also that Pweave can now catch multiple figures/code chunk.
n = 61
a = signal.firwin(n, cutoff = 0.3, window = "hamming")
#Frequency and phase response
mfreqz(a)
#Impulse and step response
impz(a)
Let's define a highpass FIR filter, if you compare to original blog post you'll notice that it has become easier since 2009. You don't need to do ' spectral inversion "manually" anymore!
n = 101
a = signal.firwin(n, cutoff = 0.3, window = "hanning", pass_zero=False)
mfreqz(a)
Notice that the plot has a caption defined in code chunk options.
n = 1001
a = signal.firwin(n, cutoff = [0.2, 0.5], window = 'blackmanharris', pass_zero = False)
mfreqz(a)